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CHIEF

Clinical Histopathology Imaging Assessment Basic Model

#deep learning
#digital pathology
#pathology
#cancer diagnosis
#prognosis prediction
CHIEF

Product Details

The CHIEF (Clinical Histopathology Imaging Evaluation Foundation) model is a pathology-based model used for cancer diagnosis and prognosis prediction. It extracts pathology imaging features through two complementary pre-training methods, including unsupervised pre-training to identify tile-level features and weakly supervised pre-training to identify patterns across slides. The CHIEF model was developed using 60,530 whole slide images (WSIs) covering 19 different anatomical sites and pre-trained on a 44TB high-resolution pathology imaging dataset to extract microscopic representations useful for cancer cell detection, tumor origin identification, molecular profile characterization, and prognosis prediction. The CHIEF model was validated on 19,491 whole-slide images on 32 independent slide sets from 24 international hospitals and cohorts, with overall performance exceeding state-of-the-art deep learning methods by up to 36.1%, demonstrating its ability to address domain shifts observed in diverse population samples and different slide preparation methods. CHIEF provides a generalizable basis for efficient digital pathology assessment of cancer patients.

Main Features

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Cancer Cell Detection: Identify cancer cells and normal cells.
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Tumor origin identification: Determine the origin of the tumor.
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Molecular profile characterization: Analyzing the molecular signature of tumors.
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Prognosis Prediction: Predicting the prognosis of cancer patients.
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Tile-level feature extraction: Unsupervised pre-training is used to identify tile-level features.
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Whole-slide pattern recognition: Weakly supervised pre-training is used to recognize patterns across entire slides.
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Applicable to multiple anatomical sites: Covers pathological imaging assessment of 19 different anatomical sites.
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High-resolution pathology imaging dataset: Pre-trained on a 44TB high-resolution dataset.

How to Use

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1. Install the necessary software environment, including Linux operating system, NVIDIA GPU and Python environment.
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2. Clone the code base of the CHIEF model to the local environment.
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3. According to the installation guide of the CHIEF model, install the required dependent libraries and tools.
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4. Download and install the pre-trained weights of the CHIEF model.
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5. Use the CHIEF model to extract features from pathology images, including tile-level and full-slide-level features.
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6. The extracted features are further analyzed and processed according to specific clinical applications, such as cancer cell detection or tumor origin identification.
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7. CHIEF models can be fine-tuned to fit specific pathology data sets and clinical tasks.
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8. Evaluate the performance of the CHIEF model and verify its effectiveness and accuracy in pathology image analysis by comparing with existing methods.

Target Users

The target audience of the CHIEF model is pathologists, cancer researchers and medical data analysis experts. Pathologists can use the CHIEF model for more accurate cancer diagnosis and prognostic assessment, researchers can use it to explore the molecular mechanisms of cancer, and medical data analysis experts can use the model to process and analyze large amounts of pathology data.

Examples

Pathologists use the CHIEF model to analyze patient tumor samples to determine the origin of the cancer and prognosis.

Researchers use CHIEF models to train and validate new cancer diagnostic methods on large-scale pathology datasets.

Medical data analysis experts use CHIEF models to identify common and unique pathological features in different cancer samples.

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› AI model
› medical health

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